Research Group Metabolic Interactions - Manuel Liebeke, PhD
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                                                         in preparation

[48] Geier, B., Dubilier, N., Liebeke, M.
"A correlative approach for combining multimodal imaging techniques in a 3D scenario"

[47] Geier, B.; Oetjen, J.; Dubillier, N.
, Liebeke, M.
"MALDI-MS imaging combined with fluorescence in situ hybridization, linking host-microbe interactions"

[46] Kleiner, M., Liebeke, M., Wentrup, C, Zarzycki, J., Kiefer, P. Vorholt, J., Dubilier, N.
"Novel metabolic pathway for the massive assimilation of host waste products into carbon storage by the chemolithoautotrophic symbiont of a gutless marine worm"

[45] Kleiner, M., Bergin, C., Lott, C., Häusler, S., Liebeke, M., Wentrup, C., Musat, N., Vagner, T., Kuypers, M.M.M., Dubilier, N., Polerecky, L.
“Single-cell analysis and modelling of autotrophic carbon fixation and carbon transfer in a gutless marine worm symbiosis.”

[44] Liebeke, M.*, Lahive, E.*, Spurgeon, D., Hao, J., Ebbels, T., Svendson, C., Bundy, JG.
"Defining the physiological niche space of an environmental sentinel through metabolic profiling"

                                                            submitted


[43] Hao,J., Liebeke, M., Sommer, U., Viant, M.,Bundy, JG., Ebbels T.
"Statistical correlations between NMR spectroscopy and direct infusion FT-ICR mass spectrometry aid annotation of unknowns in metabolomics"


                                                            accepted

                                                               2015

[42] Liebeke, M., Strittmatter, N., Fearn, S., McPhail, D., Wallis, D., Palchykov, V., Robertson, J., Lahive, E., Spurgeon, D., L Morgen, J., Kille, P., Fuchser, J., Takats, Z., Bundy, JG.
Nature Communications
6, doi:10.1038/ncomms8869
"Unique metabolites protect earthworms against plant polyphenols"

                                                                                                                            
                                                                2014

[41] Liebeke, M., Bruford, MW., Donelly, RK., Ebbels, TMD., Hao, J., Kille, P., Lahive, E., Madison, R., Morgan, AJ., Pinto-Juma, GA., Spurgeon, DJ., Svendson, C., Bundy, JG.
Biology Letters 10 (9) 20140615
"Identifying biochemical phenotypic differences between cryptic species"
                                                       
[40] Hao,J., Liebeke, M., Deneiro, M., Astle, W., Bundy, JG., Ebbels T. 
Nature Protocols 9,1416–1427
"Bayesian Deconvolution and quantification of Metabolites in Complex 1D NMR Spectra Using BATMAN"                                               

[39] Liebeke, M., Lalk, M.
International Journal of Medical Microbiology 304, pp 222–229
"Staphylococcus aureus metabolic response to changing environmental conditions - a metabolomics perspective"

[38] Bundy, JG., Kille, P., Liebeke, M., Spurgeon, DJ.
Environmental Science & Technology 2014, 48 (2), pp 885–886
"Metallothioneins may not be enough - the role of phytochelatins in invertebrate metal detoxification"

[37] Krismer, B.; Liebeke, M.; Janek, D.; Rautenberg, M.; Hornig, G.; Weidenmaier, C.; Lalk, M.; Peschel, A. 
PloS Pathogens (10(1): e1003862. doi:10.1371/journal.ppat.1003862)
"Nutrient Limitation Governs Staphylococcus aureus Metabolism and Niche Adaptation in the Human Nose."
    Nature Reviews Microbiology - Research Highlight: Adapting to a nasal lifestyle                                                               
                                                                        2013 

[36] Liebeke, M.*, Garcia-Perez, I.*,Anderson, CJ.*, Lawlor, AJ, Bennett, MH.,Morris, CA., Kille, P., Spurgeon, DJ, Bundy, JG.
PLoS ONE 8(11): e81271
“Earthworms produce phytochelatins in response to arsenic.”

[35] Behrends,V., Bell, T., Liebeke, M., Cordes-Blauert, A., Ashraf, S., Nair, C., Zlosnik, J., Williams, H., Bundy, J.  
Journal of Biological Chemistry, 288 (21):15098–15109
“Metabolite profiling to characterize disease-related bacteria: gluconate excretion by Pseudomonas aeruginosa mutants and clinical isolates from cystic fibrosis patients”

[34] Liebeke, M., Hao, J., Ebbels, T, Bundy, JG. 
Analytical Chemistry 85: 4605−4612
“Combining simple spectral ordering approach with peak fitting for one-dimensional NMR quantitative metabolomics”

[33] Meier, T., Marcos, J., Wodke, AHJ., Liebeke, M., Gutiérrez-Gallego, R., Serrano, L. 
Molecular BioSystems 9, 1743-1755
“Comprehensive metabolome analysis and quantitative integration with proteomics data in Mycoplasma pneumoniae” pdf

[32] Mader, D., Liebeke, M., Winstel, V., Leibig, M., Götz,, F., Lalk M., Peschel,, A.
BMC Microbiology 2013, 13(1):7
“Role of N-terminal protein formylation for central metabolic processes in Staphylococcus aureus”

[31] Liebeke, M., Bundy, JG. 
Biochemical and Biophysical Research Communications 430(4), 1306-1311
“Biochemical diversity of betaines in earthworms” pdf

                                                               2012

[30] Geiger, T., Francois, P., Liebeke, M., Frauenholz, M., Goerke, C., Krismer, B., Schrenzel, J., Lalk, M., Wolz, C. (2012)
PloS Pathogens 8(11): e1003016

“The Stringent Response of Staphylococcus aureus and its involvement in surviving phagocytosis through the induction of intracellular PSMs expression.”

[29] Liebeke, M., Bundy, JG. (2012)
Metabolomics 8:819–830
“Tissue disruption and extraction methods for metabolic profiling of an invertebrate sentinel species”

[28] Kleiner, M., Wentrup, C., Lott, C., Teeling, H., Wetzel, S., Young, J., Chang, J., Shah, M., VerBerkmoes, N., Zarzycki, J., Fuchs, G., Markert, S., Hempel, K., Voigt, B., Becher, D., Liebeke, M., Lalk, M., Albrecht, D., Hecker, M., Schweder, T., Dubilier, N. (2012)
Proc Natl Acad Sci USA 109 (19):E1173-82
“Metaproteomics of a gutless marine worm and its symbiotic microbial community reveal unusual pathways for carbon and energy use"

[27] Reiss, S., Pane-Farre, J., Fuchs, S., Francois, P., Liebeke, M., Lalk, M., Schrenzel, J., Wolz, C., Hecker, M., Engelmann, S. (2012) 
Antimicrobial Agents and Chemotherapy 56 (2):787-804
“Global analysis of the Staphylococcus aureus response to mupirocin”

[26] Birkenstock, T.*; Liebeke, M.*; Winstel, V.; Krismer, B.; Gekeler, C.; Niemiec, MJ; Bisswanger, H.; Lalk, M.; Peschel, A. (2012)
Journal of Biological Chemistry 287 (4):2887–95
“Exometabolome analysis identifies pyruvate dehydrogenase as a target for the antibiotic triphenyl-bismuthdichloride in multiresistant bacterial pathogens.”

[25] Liebeke, M., Dorries, K., Meyer, H., Lalk, M. (2012) Methods Mol Biol  815, 377-398
“Metabolome Analysis of Gram-Positive Bacteria such as Staphylococcus aureus by GC-MS and LC-MS” –bookchapter-
                                                               2011

[24] Tredwell, G., Behrend, V., Geier, FA., Liebeke, M., Bundy, JG. (2011)
Analytical Chemistry 15; 83(22): 8683-7
“Between-person comparison of metabolite fitting for NMR-based quantitative metabolomics”

[23] Liang, CG.; Liebeke, M.; Schwarz, R.; Zuhlke, D.; Fuchs, S.; Menschner, L.; Engelmann, S.; Wolz, C.; Jaglitz, S.; Bernhardt, J.; Hecker, M; Lalk, M.; Dandekar, T. (2011)
Proteomics 11, 1915–35
“Staphylococcus aureus physiological growth limitations: Insights from flux calculations built on proteomics and external metabolite data.”

[22] Liebeke, M.*, Dorries, K.*, Zuhlke, D.*, Bernhardt, J; Fuchs, S; Pane-Farre, J; Engelmann, S; Volker, U; Bode, R; Dandekar, T; Lindequist, U; Hecker, M; Lalk, M (2011)
Molecular BioSystems 7, 1241–53
“A metabolomics and proteomics study of the adaptation of Staphylococcus aureus to glucose starvation.” pdf
                                                               2010

[21] Leibig, M., Liebeke, M., Mader, D., Lalk, M., Peschel, A., Gotz, F. (2010)
J Bacteriology 193(4): 952–62
“Pyruvate formate lyase acts as a formate supplier for metabolic processes under anaerobiosis in Staphylococcus aureus”

[20] Wilmes, B., Hartung, A., Lalk, M., Liebeke, M., Schweder, T., Neubauer, P. (2010)
Microbial Cell Factories 9: 72
“Fed-batch process for the psychrotolerant marine bacterium Pseudoalteromonas haloplanktis“

[19] Liebeke, M., Meyer, H., Donat, S., Ohlsen, K., Lalk, M. (2010)
Chemistry and Biology 17: 820–30
“A Metabolomic View of Staphylococcus aureus and Its Ser/Thr Kinase and Phosphatase Deletion Mutants: Involvement in Cell Wall Biosynthesis.”

[18] Thanh, T., Jurgen, B., Bauch, M., Liebeke, M., Lalk, M., Ehrenreich, A., Evers, S., Maurer, KH., Antelmann, H., Ernst, F., Homuth, G., Hecker, M., Schweder, T. (2010)
Appl Microbiol Biotechnol 87:2227–35
“Regulation of acetoin and 2,3-butanediol utilization in Bacillus licheniformis”

[17] Meyer, H.*, Liebeke, M.*, and Lalk, M. (2010). 
Analytical Biochemistry 401:250–9
“A protocol for the investigation of the intracellular Staphylococcus aureus metabolome.”

                                                               2009

[16] Gaupp, R., Schlag, S., Liebeke, M., Lalk, M., and Gotz, F. 
J Bacteriology 192(9): 2385–94
“Advandage of up-regulation of succinate dehydrogenase in Staphylococcus aureus biofilm.”

[15] Pagels, M., Fuchs, S., Pané-Farré, J., Kohler, C., Menschner, L., Hecker, M., McNamarra, P.J., Bauer, M.C., Wachenfeldt, C.v., Liebeke, M., Lalk, M., Sander, G., Eiff, C.v., Proctor, R.A., and Engelmann, S.
Molecular Microbiology 76(5):1142–61
“A redox sensing mechanism by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Staphylococcus aureus.”

[14] Geiger, T., Goerke, C., Fritz, M., Schäfer, T., Ohlsen, K., Liebeke, M., Lalk, M., Wolz, C.  
Infection and Immunity 78(5):1873–83
“Role of the (p)ppGpp synthase RSH, a RelA/SpoT homolog, in stringent response and virulence of Staphylococcus aureus.”

[13] Liebeke, M., Wunder, A., Lalk, M. 
Analytical Biochemistry 401:312–4
“A rapid microwave-assisted derivatization of bacterial metabolome samples for gaschromatography/mass spectrometry analysis.”

[12] Pother, D.C.*, Liebeke, M.*, Hochgrafe, F., Antelmann, H., Becher, D., Lalk, M., Lindequist, U., Borovok, I., Cohen, G., Aharonowitz, Y., and Hecker, M.
J Bacteriology 191(24): 7520–30
“Diamide triggers mainly S-thiolations in the cytoplasmic proteome of Bacillus subtilis and Staphylococcus aureus.”

[11] Michalik, S., Liebeke, M., Zuhlke, D., Lalk, M., Bernhardt, J., Gerth, U., and Hecker, M. Proteomics 9 (19): 4468-77.
“Proteolysis during long-term glucose starvation in Staphylococcus aureus COL.”

[10] Hamberger, J.; Liebeke, M.; Kaiser, M., Bracht, K.; Olszewski, U.; Zeillinger, R.; Hamilton, G.; Braun, D.; Bednarski, PJ.
Anticancer-Drugs, 20: 559-72.
“Characterisation of chemosensitivity and resistance of human cancer cell lines to platinum(II) and platinum(IV) anticancer agents.”

[9] Donat, S., Streker, K., Schirmeister, T., Rakette, S., Stehle, T., Liebeke, M. ; Lalk, M.; Ohlsen, K. 
J Bacteriology 191(13): 4056-69.
“Transcriptome and functional analysis of the eukaryotic-type ser/thr kinase PknB in Staphylococcus aureus.”

[8] Liebeke, M., Brozel, V.S., Hecker, M., and Lalk, M.
Applied Microbiology Biotechnol 83: 161-73
“Chemical characterization of soil extract as growth media for the ecophysiological study of bacteria.”

[7] Nguyen, T.T., Eiamphungporn, W., Mader, U., Liebeke, M., Lalk, M., Hecker, M., Antelmann, H., Helmann, JD 
Molecular Microbiology 71: 876-94
“Genome-wide responses to carbonyl electrophiles in Bacillus subtilis: control of the thiol- dependent formaldehyde dehydrogenase AdhA and cysteine proteinase YraA by the MerR- family regulator YraB (AdhR).”
                                                               2008

[6] Schlag, S., Fuchs, S., Nerz, C., Gaupp, R., Engelmann, S., Liebeke, M., Lalk, M., Hecker, M., Goetz, F.  
J Bacteriology 190: 7847-58.
“Characterization of the oxygen-responsive NreABC regulon of Staphylococcus aureus.”

[5] Kohler, C., von Eiff, C., Liebeke, M., McNamara, P.J., Lalk, M., Proctor, R.A., Hecker, M., Engelmann, S. 
J Bacteriology 190: 6351-64.
“A defect in menadione biosynthesis induces global changes in gene expression in Staphylococcus aureus.”

[4] Liebeke, M.*, Pother, D.C.*, van Duy, N., Albrecht, D., Becher, D., Hochgrafe, F., Lalk, M., Hecker, M., Antelmann, H. 
Molecular Microbiology 69: 1513-29
“Depletion of thiol-containing proteins in response to quinones in Bacillus subtilis.”

[3] Hochgrafe, F., Wolf, C., Fuchs, S., Liebeke, M., Lalk, M., Engelmann, S., and Hecker, M. 
J Bacteriology 190: 4997-5008.
“Nitric oxide stress induces different responses but mediates comparable protein thiol protection in Bacillus subtilis and Staphylococcus aureus.”

                                                               2007

[2] Bracht, K., Liebeke, M., Ritter, C.A., Grunert, R., and Bednarski, P.J. 
Anticancer Drugs 18: 389-404
“Correlations between the activities of 19 standard anticancer agents, antioxidative enzyme activities and the expression of ATP-binding cassette transporters: comparison with the National Cancer Institute data.”
                                                               2006

[1] Saczewski, J., Brzozowski, Z., Saczewski, F., Bednarski, P.J., Liebeke, M., and Gdaniec, M. Bioorganic & Medicinal Chemistry Letters 16: 3663-67.
“Synthesis and in vitro anti-tumor activity of N-{1- (3-thioxo-5,6-dihydroimidazo 2,1-c 1,2,4 thiadiazol-7-ylthio)thio carbonyl -2-imidazolidene}arylsulfonamides.”









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